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Bio::Phylo	
  –	
  	
                                 	
  
Phyloinformatic	
  analysis	
  using	
  Perl 	
  	
  
Rutger	
...
Introduction	
  

Bio::Phylo	
  is	
  a	
  BioPerl-­‐compa1ble	
  phyloinforma1c	
  
toolkit	
  that	
  implements	
  EvoI...
Use	
  Cases	
  

  PhyloInforma1c	
  workflows,	
  
    data	
  transforma1on	
  
  PhyloWS	
  servers	
  and	
  
    cl...
Future	
  Directions	
  

  Tighter	
  integra1on	
  in	
  BioPerl	
  
  Extending	
  PhyloWS	
  func1onality	
  
  SWI...
Learn	
  More	
  
  hKp://search.cpan.org/dist/Bio-­‐Phylo	
  	
  

  Or	
  google	
  Bio::Phylo	
  

  Or	
  @rvosa	
 ...
Acknowledgements	
  

  Jason	
  Caravas	
  

  Klaas	
  Hartmann	
  

  Mark	
  Jensen	
  

  Chase	
  Miller	
  

 ...
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Bio::Phylo - phyloinformatic analysis using perl

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Lightning talk for iEvoBio 2010 on the perl toolkit for managing and manipulation phylogenetic data.

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Bio::Phylo - phyloinformatic analysis using perl

  1. 1. Bio::Phylo  –        Phyloinformatic  analysis  using  Perl     Rutger  Vos  
  2. 2. Introduction   Bio::Phylo  is  a  BioPerl-­‐compa1ble  phyloinforma1c   toolkit  that  implements  EvoIO  concepts  and   technologies  
  3. 3. Use  Cases     PhyloInforma1c  workflows,   data  transforma1on     PhyloWS  servers  and   clients     Visualiza:on     Analysis  and  simula1on  of   tree  shapes  
  4. 4. Future  Directions     Tighter  integra1on  in  BioPerl     Extending  PhyloWS  func1onality     SWIG  backends,  e.g.  HyPhy,  NCL,  Beagle  
  5. 5. Learn  More     hKp://search.cpan.org/dist/Bio-­‐Phylo       Or  google  Bio::Phylo     Or  @rvosa     Computa1onal  Phyloinforma1cs:  A  BGI-­‐Shenzhen  and  NESCent   Course  (August  5-­‐17  2010)  
  6. 6. Acknowledgements     Jason  Caravas     Klaas  Hartmann     Mark  Jensen     Chase  Miller     Aki  Mimoto  
  • Vhjkjh

    Feb. 24, 2021

Lightning talk for iEvoBio 2010 on the perl toolkit for managing and manipulation phylogenetic data.

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