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Chem-805 Identification of organic and inorganic compounds by spectroscopy   ,[object Object],[object Object],[object Object],[object Object],Index MS
Fragmentation process ,[object Object],There are 3 type of fragmentations: ---- C – C ---- ---- C  + .  C ---- + ---- C –  Z  ---- ---- C  + .  Z ---- + At heteroatom +  . +  .    to heteroatom ---- C - C –  Z  ---- C=Z  + ---- C  .  + +  . ---- C - C –  Z  ---- Z  + . ---- C = C  + +  .
Fragmentation process ,[object Object],There are 3 type of fragmentations: ---- HC – C –  Z  ---- ---- C=C  + HZ + Retro Diels-alder +   . +   . McLafferty +   . + +  . +  .
Fragmentation process ,[object Object],There are 3 type of fragmentations:
Fragmentation rules in MS ,[object Object],[object Object],[object Object],R R CH +   <  C + R R R R R” CH R’ Loss of Largest Subst. Is most favored
Illustration of first 3 rules (large MW)
Branched alkanes MW=170 M . +  is absent with heavy branching Fragmentation occur at branching:  largest fragment loss
Illustration of first 3 rules  (Linear alkane with Smaller MW) Molecular ion is stronger than  in previous sample
Illustration of first 3 rules  (Branched alkane with Smaller MW) Molecular ion smaller than linear alkane Cleavage at branching is favored 43
Rule 3 Alkanes Cleavage Favored at branching Loss of Largest substituent Favored Rule1: intensity of  M . +   is smaller with branching
Fragmentation rules in MS ,[object Object],[object Object]
Aromatic ring has stable   M .+
Cycloalkane ring has stable   M .+
Fragmentation rules in MS ,[object Object],[object Object],+   . + -R . + +  . +  .
Retro Diels-alder +   . +   .
Fragmentation rules in MS ,[object Object],-R . Tropylium ion m/z  91
Tropylium ion
[object Object],Fragmentation rules in MS - [RCH 2 ]  - [R 2 ]  larger
Fragmentation rules in MS ,[object Object],McLafferty Y    H, R, OH, NR2 Ion Stabilized  by resonance - CH 2 =CH 2
Alkenes Most intense peaks are often: m/z 41, 55, 69 Rule 4: Double Bond Stabilize M  + Rule 5: Double Bond favor  Allylic cleavage -Et  -29 M  +  = 112 m/z = 83 CH 2 CH CH  + Et Et Me + CH 2 CH CH Et Me CH 2 CH CH  + Et Me
Alkenes
Aromatic compound
Alcohols
Hydroxy compounds Loss of largest group - R 3  If R 1 =H  m/z  45, 59, 73 … If R 1 =alkyl  m/z  59, 73, 87 … M – (H 2 O) –  (C1=C2) Alkene - H 2 O - CHR=CHR M – (H 2 O) –  (H 2 O)
Phenol
 
Aromatic Ether Molecular ion is prominent  1) Cleavage in    of aromatic ring Rearrangement 2) C 5 H 5 -CO m/z 93 m/z 65 - CH 2 =CH 2 m/z 94 - R 
Aliphatic Ether CH 3   —CH 2  —O—CH 2  —CH 2  —CH 2  —CH 3 CH 3   —CH 2  —O +  =CH 2 CH 3   —CH 2  —O   —CH 2 + •   + Cleavage of C-C next ot Oxygen Loss of biggest fragment m/z 59 B
Ether Rearrangement Index MS MS-fragmentation-2 Box rearr. 1- Cleavage of C-C next to Oxygen m/z 73 m/z 45 M ·+ 2- Cleavage of C-O bond: charge on alkyl m/z 73 m/z 45 B CH 3   —CH 2 —CH —O —CH 2  —CH 3 CH 3 CH =O +  —CH 2   CH 3 H — CH 3 CH =O +   H   CH 3

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Ms 1

  • 1.
  • 2.
  • 3.
  • 4.
  • 5.
  • 6. Illustration of first 3 rules (large MW)
  • 7. Branched alkanes MW=170 M . + is absent with heavy branching Fragmentation occur at branching: largest fragment loss
  • 8. Illustration of first 3 rules (Linear alkane with Smaller MW) Molecular ion is stronger than in previous sample
  • 9. Illustration of first 3 rules (Branched alkane with Smaller MW) Molecular ion smaller than linear alkane Cleavage at branching is favored 43
  • 10. Rule 3 Alkanes Cleavage Favored at branching Loss of Largest substituent Favored Rule1: intensity of M . + is smaller with branching
  • 11.
  • 12. Aromatic ring has stable M .+
  • 13. Cycloalkane ring has stable M .+
  • 14.
  • 16.
  • 18.
  • 19.
  • 20. Alkenes Most intense peaks are often: m/z 41, 55, 69 Rule 4: Double Bond Stabilize M  + Rule 5: Double Bond favor Allylic cleavage -Et  -29 M  + = 112 m/z = 83 CH 2 CH CH  + Et Et Me + CH 2 CH CH Et Me CH 2 CH CH + Et Me
  • 24. Hydroxy compounds Loss of largest group - R 3  If R 1 =H m/z 45, 59, 73 … If R 1 =alkyl m/z 59, 73, 87 … M – (H 2 O) – (C1=C2) Alkene - H 2 O - CHR=CHR M – (H 2 O) – (H 2 O)
  • 26.  
  • 27. Aromatic Ether Molecular ion is prominent 1) Cleavage in  of aromatic ring Rearrangement 2) C 5 H 5 -CO m/z 93 m/z 65 - CH 2 =CH 2 m/z 94 - R 
  • 28. Aliphatic Ether CH 3 —CH 2 —O—CH 2 —CH 2 —CH 2 —CH 3 CH 3 —CH 2 —O + =CH 2 CH 3 —CH 2 —O —CH 2 + • + Cleavage of C-C next ot Oxygen Loss of biggest fragment m/z 59 B
  • 29. Ether Rearrangement Index MS MS-fragmentation-2 Box rearr. 1- Cleavage of C-C next to Oxygen m/z 73 m/z 45 M ·+ 2- Cleavage of C-O bond: charge on alkyl m/z 73 m/z 45 B CH 3 —CH 2 —CH —O —CH 2 —CH 3 CH 3 CH =O + —CH 2 CH 3 H — CH 3 CH =O + H CH 3