SlideShare ist ein Scribd-Unternehmen logo
1 von 18
Downloaden Sie, um offline zu lesen
1st NoB Hackathon
April 26-27
@Stanford University
@Maastrict University
• Michel Dumontier
• Natasha Haulman (superadmin)
• Mark Musen
• Andrew Su
• Ben Good
• Chris EveloData FAIRport
• Mark Wilkinson
European site @ Maastricht University
• Chris Evelo (NoB)
• Mark Wilkinson (FAIRport)
What is it?
5
Pathways
Diseases
Proteins
Variants
Genes
Drugs
Goal: Assemble a network of biomedical entities that is
comprehensive, current, and computable.
The biomedical literature is growing fast
6
In 2013, there were 1,108,920 new articles indexed in PubMed, bringing the current total
to over 23 million.
0
200,000
400,000
600,000
800,000
1,000,000
1,200,000
1983 1988 1993 1998 2003 2008 2013
Number of new PubMed-indexed articles
The biomedical literature is growing fast
7
In 2013, there were 1,108,920 new articles indexed in PubMed, bringing the current total
to over 23 million.
0
200,000
400,000
600,000
800,000
1,000,000
1,200,000
1983 1988 1993 1998 2003 2008 2013
Number of new PubMed-indexed articles
k n o w l e d g e
The Kitchen Sink approach
• Biocuration
• Text-mining
• Crowdsourcing
• Citizen science
• Semantic web
• Bio-ontologies
• Network biology
• Biomedical domain experts
• Scientific publishers
• Bio-IT
• …
8
1. Knowledgebase infrastructure
• Scaling to billions or trillions of relationships
• Efficient query and access
• Generic and extensible data model
• Interoperability with other resources
9
2. Populating the knowledgebase
• Scalability with biomedical research
• Synergies between methods
• Assessing confidence
• Preserving provenance
10
3. Driving Biological Projects
• Defining the domain area
• N-of-1 cancer
• Drug repurposing
• Neuroscience
• Defining the specific data needed
• Defining the mining/analysis strategy
• Defining the testable hypotheses
11
Overarching goals
• Demonstrate feasibility
• Demonstrate collaboration
• Demonstrate synergy
• Secure funding for multi-center multi-PI consortium
12
Schedule
Saturday April 26
8:30AM: Registration and Breakfast
9:00AM: Introductions, Problem Statement, Ideas session
10:15AM: Project Pitches and Team Formation
11:00AM: Tutorials
12:15PM: Lunch is served
6:00PM: Progress Reports
7:00PM: Transportation leaves for restaurant
7:15-8:00PM: Cocktails @ Left Bank
8:00PM: Dinner @ Left bank
Sunday April 27
8:00AM : Breakfast is served
12:15PM: Lunch is served
4:30PM : Pitches and Demos
6:00PM : Winners announced, prizes awarded, final remarks.
Prizes
• $500 for best motivating use case
• $500 for most sustainable infrastructure design
• 2x$500 for best applications
Format
• Form groups of at most 5
• Must contain at least 2 local participants
• Up to 3 additional remote participants (total of 8)
• All code must be open and available
• GitHub repo https://github.com/Network-of-BioThings/
Judges
• Mark Musen (NCBO)
• Bob Stanley (IO Informatics)
• Paul Alexander (NCBO)
• Manuel Salvadores (NCBO)
• Michel Dumontier (NCBO)
• Andrew Su (Scripps – Use Cases)
• Criteria
• Innovation
• Integration
• Sustainability / Scalability
• Impact Potential
Other Stuff
• Wifi
• Bathrooms
• Room configuration
• projectors
Let’s Get Started!
• GitHub
• https://github.com/Network-of-BioThings/
• Hackathon repo
• Use Cases
• Resources
• Participant Profiles

Weitere ähnliche Inhalte

Was ist angesagt?

ticTOCs time has come (CSA)
ticTOCs time has come (CSA)ticTOCs time has come (CSA)
ticTOCs time has come (CSA)Roddy MacLeod
 
Supporting a diverse ecology. New university presses and academic-led publish...
Supporting a diverse ecology. New university presses and academic-led publish...Supporting a diverse ecology. New university presses and academic-led publish...
Supporting a diverse ecology. New university presses and academic-led publish...Jisc
 
Interview slides 19.09.16
Interview slides 19.09.16Interview slides 19.09.16
Interview slides 19.09.16Nick Sheppard
 
Outreach librarians at_large_weds_am_training_session_7sept111
Outreach librarians at_large_weds_am_training_session_7sept111Outreach librarians at_large_weds_am_training_session_7sept111
Outreach librarians at_large_weds_am_training_session_7sept111EliBa27
 
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...Wiley
 
Open Research and Archaeology
Open Research and ArchaeologyOpen Research and Archaeology
Open Research and ArchaeologyCrossref
 
Open Access, Intellectual Property and Conservation Science
Open Access, Intellectual Property and Conservation ScienceOpen Access, Intellectual Property and Conservation Science
Open Access, Intellectual Property and Conservation ScienceUQSCADS
 
Wikipedia and Libraries: what’s in it for you?
Wikipedia and Libraries: what’s in it for you?Wikipedia and Libraries: what’s in it for you?
Wikipedia and Libraries: what’s in it for you?OCLC
 
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...CONUL Conference
 
Monographs and library-based publishing
Monographs and library-based publishingMonographs and library-based publishing
Monographs and library-based publishingJisc
 
Using social media and quantitative metrics to engage the research community
Using social media and quantitative metrics to engage the research communityUsing social media and quantitative metrics to engage the research community
Using social media and quantitative metrics to engage the research communityNick Sheppard
 
What support is being provided to researchers? A view from a university
What support is being provided to researchers? A view from a universityWhat support is being provided to researchers? A view from a university
What support is being provided to researchers? A view from a universityUoLResearchSupport
 
Digital repositories and Knowledge Management
Digital repositories and Knowledge ManagementDigital repositories and Knowledge Management
Digital repositories and Knowledge ManagementZaven Hakopov
 
Open Journal Systems (OJS) Workshop
Open Journal Systems (OJS) Workshop Open Journal Systems (OJS) Workshop
Open Journal Systems (OJS) Workshop Repository Fringe
 
3rd year Maths session 2 Oct 2017
3rd year Maths session 2 Oct 20173rd year Maths session 2 Oct 2017
3rd year Maths session 2 Oct 2017EISLibrarian
 
ChemRxiv, Plan S, and OA publishing
ChemRxiv, Plan S, and OA publishingChemRxiv, Plan S, and OA publishing
ChemRxiv, Plan S, and OA publishingmolmodbasics
 

Was ist angesagt? (20)

NISO Webinar May 8: Taking Full Advantage: Discovery of Open Access Content.
NISO Webinar May 8: Taking Full Advantage: Discovery of Open Access Content.NISO Webinar May 8: Taking Full Advantage: Discovery of Open Access Content.
NISO Webinar May 8: Taking Full Advantage: Discovery of Open Access Content.
 
ticTOCs time has come (CSA)
ticTOCs time has come (CSA)ticTOCs time has come (CSA)
ticTOCs time has come (CSA)
 
Supporting a diverse ecology. New university presses and academic-led publish...
Supporting a diverse ecology. New university presses and academic-led publish...Supporting a diverse ecology. New university presses and academic-led publish...
Supporting a diverse ecology. New university presses and academic-led publish...
 
Interview slides 19.09.16
Interview slides 19.09.16Interview slides 19.09.16
Interview slides 19.09.16
 
Outreach librarians at_large_weds_am_training_session_7sept111
Outreach librarians at_large_weds_am_training_session_7sept111Outreach librarians at_large_weds_am_training_session_7sept111
Outreach librarians at_large_weds_am_training_session_7sept111
 
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...
Annika Dean - Scimex: Wiley’s Partnership with the Australian Science Media C...
 
Open Research and Archaeology
Open Research and ArchaeologyOpen Research and Archaeology
Open Research and Archaeology
 
Alpsp 20160915 oamj
Alpsp 20160915 oamjAlpsp 20160915 oamj
Alpsp 20160915 oamj
 
Open Access, Intellectual Property and Conservation Science
Open Access, Intellectual Property and Conservation ScienceOpen Access, Intellectual Property and Conservation Science
Open Access, Intellectual Property and Conservation Science
 
Playing is for grown ups - Walsh
Playing is for grown ups - WalshPlaying is for grown ups - Walsh
Playing is for grown ups - Walsh
 
Wikipedia and Libraries: what’s in it for you?
Wikipedia and Libraries: what’s in it for you?Wikipedia and Libraries: what’s in it for you?
Wikipedia and Libraries: what’s in it for you?
 
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...
‘Emerging from the chrysalis – transforming libraries for the future’ - Danny...
 
Monographs and library-based publishing
Monographs and library-based publishingMonographs and library-based publishing
Monographs and library-based publishing
 
Using social media and quantitative metrics to engage the research community
Using social media and quantitative metrics to engage the research communityUsing social media and quantitative metrics to engage the research community
Using social media and quantitative metrics to engage the research community
 
What support is being provided to researchers? A view from a university
What support is being provided to researchers? A view from a universityWhat support is being provided to researchers? A view from a university
What support is being provided to researchers? A view from a university
 
Digital repositories and Knowledge Management
Digital repositories and Knowledge ManagementDigital repositories and Knowledge Management
Digital repositories and Knowledge Management
 
Open Journal Systems (OJS) Workshop
Open Journal Systems (OJS) Workshop Open Journal Systems (OJS) Workshop
Open Journal Systems (OJS) Workshop
 
BHL Update for GBIF
BHL Update for GBIFBHL Update for GBIF
BHL Update for GBIF
 
3rd year Maths session 2 Oct 2017
3rd year Maths session 2 Oct 20173rd year Maths session 2 Oct 2017
3rd year Maths session 2 Oct 2017
 
ChemRxiv, Plan S, and OA publishing
ChemRxiv, Plan S, and OA publishingChemRxiv, Plan S, and OA publishing
ChemRxiv, Plan S, and OA publishing
 

Andere mochten auch

Design thinking in efl context
Design thinking in efl contextDesign thinking in efl context
Design thinking in efl contextDebopriyo Roy
 
Maktjensen
MaktjensenMaktjensen
MaktjensenGjerde
 
Colonna sonora in_openoffice
Colonna sonora in_openofficeColonna sonora in_openoffice
Colonna sonora in_openofficeToni Pierdomé
 
Bgs120 debopriyo roy
Bgs120 debopriyo royBgs120 debopriyo roy
Bgs120 debopriyo royDebopriyo Roy
 
The Defense Industry In Western Central Pennsylvania
The Defense Industry In Western Central PennsylvaniaThe Defense Industry In Western Central Pennsylvania
The Defense Industry In Western Central PennsylvaniaBob Shark
 
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09Convegno Polizie Locali Sicurezza Stradale Riccione 09 09
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09Oboni Riskope Associates Inc.
 
Proiect 1000 - Stefan Szakal
Proiect 1000 - Stefan SzakalProiect 1000 - Stefan Szakal
Proiect 1000 - Stefan SzakalGeekMeet
 
New Directions In Russian Private Equity
New Directions In Russian Private EquityNew Directions In Russian Private Equity
New Directions In Russian Private EquityThomas Nastas
 
Path to Commercialization, Nastas Presentation to Winner of Grant Competition
Path to Commercialization, Nastas Presentation to Winner of Grant CompetitionPath to Commercialization, Nastas Presentation to Winner of Grant Competition
Path to Commercialization, Nastas Presentation to Winner of Grant CompetitionThomas Nastas
 
生命教育--4塊糖的省思
生命教育--4塊糖的省思生命教育--4塊糖的省思
生命教育--4塊糖的省思chen bowei
 
AgilePalooza - BigScrum - Scaling Team To Program
AgilePalooza - BigScrum - Scaling Team To ProgramAgilePalooza - BigScrum - Scaling Team To Program
AgilePalooza - BigScrum - Scaling Team To ProgramThinkLouder
 
Russian & English: Nastas Ltrs of Confirmation-Contributions
Russian & English: Nastas Ltrs of Confirmation-ContributionsRussian & English: Nastas Ltrs of Confirmation-Contributions
Russian & English: Nastas Ltrs of Confirmation-ContributionsThomas Nastas
 
IT for Nursing @ RIC - 5
IT for Nursing @ RIC - 5IT for Nursing @ RIC - 5
IT for Nursing @ RIC - 5Sascha Funk
 
Card Sorting & Tree Testing Webinar
Card Sorting & Tree Testing WebinarCard Sorting & Tree Testing Webinar
Card Sorting & Tree Testing WebinarUserZoom
 
20121119 Csusm Business Br
20121119 Csusm Business Br20121119 Csusm Business Br
20121119 Csusm Business BrSteveScheibe
 

Andere mochten auch (20)

Design thinking in efl context
Design thinking in efl contextDesign thinking in efl context
Design thinking in efl context
 
Maktjensen
MaktjensenMaktjensen
Maktjensen
 
Colonna sonora in_openoffice
Colonna sonora in_openofficeColonna sonora in_openoffice
Colonna sonora in_openoffice
 
Bgs120 debopriyo roy
Bgs120 debopriyo royBgs120 debopriyo roy
Bgs120 debopriyo roy
 
The Defense Industry In Western Central Pennsylvania
The Defense Industry In Western Central PennsylvaniaThe Defense Industry In Western Central Pennsylvania
The Defense Industry In Western Central Pennsylvania
 
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09Convegno Polizie Locali Sicurezza Stradale Riccione 09 09
Convegno Polizie Locali Sicurezza Stradale Riccione 09 09
 
Proiect 1000 - Stefan Szakal
Proiect 1000 - Stefan SzakalProiect 1000 - Stefan Szakal
Proiect 1000 - Stefan Szakal
 
New Directions In Russian Private Equity
New Directions In Russian Private EquityNew Directions In Russian Private Equity
New Directions In Russian Private Equity
 
Path to Commercialization, Nastas Presentation to Winner of Grant Competition
Path to Commercialization, Nastas Presentation to Winner of Grant CompetitionPath to Commercialization, Nastas Presentation to Winner of Grant Competition
Path to Commercialization, Nastas Presentation to Winner of Grant Competition
 
Ieeej 2010
Ieeej 2010Ieeej 2010
Ieeej 2010
 
Stripgenerator
StripgeneratorStripgenerator
Stripgenerator
 
Para ver y bajar los ppt
Para ver y bajar los pptPara ver y bajar los ppt
Para ver y bajar los ppt
 
Tolerability and Decision Making Discussion
Tolerability and Decision Making DiscussionTolerability and Decision Making Discussion
Tolerability and Decision Making Discussion
 
生命教育--4塊糖的省思
生命教育--4塊糖的省思生命教育--4塊糖的省思
生命教育--4塊糖的省思
 
Cassass presentation WLF2 Rome
Cassass presentation WLF2 RomeCassass presentation WLF2 Rome
Cassass presentation WLF2 Rome
 
AgilePalooza - BigScrum - Scaling Team To Program
AgilePalooza - BigScrum - Scaling Team To ProgramAgilePalooza - BigScrum - Scaling Team To Program
AgilePalooza - BigScrum - Scaling Team To Program
 
Russian & English: Nastas Ltrs of Confirmation-Contributions
Russian & English: Nastas Ltrs of Confirmation-ContributionsRussian & English: Nastas Ltrs of Confirmation-Contributions
Russian & English: Nastas Ltrs of Confirmation-Contributions
 
IT for Nursing @ RIC - 5
IT for Nursing @ RIC - 5IT for Nursing @ RIC - 5
IT for Nursing @ RIC - 5
 
Card Sorting & Tree Testing Webinar
Card Sorting & Tree Testing WebinarCard Sorting & Tree Testing Webinar
Card Sorting & Tree Testing Webinar
 
20121119 Csusm Business Br
20121119 Csusm Business Br20121119 Csusm Business Br
20121119 Csusm Business Br
 

Ähnlich wie 1st Network-of-BioThings Hackathon

ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisa
ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years PisaERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisa
ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisajodischneider
 
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdfAlain van Gool
 
Report from the International Confederation of Countries Advisory Council - M...
Report from the International Confederation of Countries Advisory Council - M...Report from the International Confederation of Countries Advisory Council - M...
Report from the International Confederation of Countries Advisory Council - M...Human Variome Project
 
Data dialogue - Human Genomic Data Discovery
Data dialogue - Human Genomic Data DiscoveryData dialogue - Human Genomic Data Discovery
Data dialogue - Human Genomic Data DiscoveryFiona Nielsen
 
Open Access Week - Oxford, 20-24 Oct 2014
Open Access Week - Oxford, 20-24 Oct 2014Open Access Week - Oxford, 20-24 Oct 2014
Open Access Week - Oxford, 20-24 Oct 2014Susanna-Assunta Sansone
 
Open Science: Where Theory Meets Practice
Open Science: Where Theory Meets PracticeOpen Science: Where Theory Meets Practice
Open Science: Where Theory Meets PracticePhilip Bourne
 
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...Wiley
 
Advocating for change in the scientific enterprise
Advocating for change in the scientific enterpriseAdvocating for change in the scientific enterprise
Advocating for change in the scientific enterpriseJessica Polka
 
Open access - where are we now and where to from here?
Open access - where are we now and where to from here?Open access - where are we now and where to from here?
Open access - where are we now and where to from here?SusanMRob
 
Why ContentMining is useful
Why ContentMining is usefulWhy ContentMining is useful
Why ContentMining is usefulTheContentMine
 
Why ContentMining is useful
Why ContentMining is usefulWhy ContentMining is useful
Why ContentMining is usefulpetermurrayrust
 
THOR Workshop - Data Publishing PLOS
THOR Workshop - Data Publishing PLOSTHOR Workshop - Data Publishing PLOS
THOR Workshop - Data Publishing PLOSMaaike Duine
 
Hackathon for health, assisted living, social care and communities nov 2015
Hackathon for health, assisted living, social care and communities nov 2015Hackathon for health, assisted living, social care and communities nov 2015
Hackathon for health, assisted living, social care and communities nov 2015esben1962
 
ContentMining for France and Europe; Lessons from 2 years in UK
ContentMining for France and Europe; Lessons from 2 years in UKContentMining for France and Europe; Lessons from 2 years in UK
ContentMining for France and Europe; Lessons from 2 years in UKpetermurrayrust
 
UK Dementia Research Institute
UK Dementia Research InstituteUK Dementia Research Institute
UK Dementia Research InstituteYasir Hameed
 
Anne-Marie Coriat strategic approach to capacity & skills gaps in scientifi...
Anne-Marie Coriat   strategic approach to capacity & skills gaps in scientifi...Anne-Marie Coriat   strategic approach to capacity & skills gaps in scientifi...
Anne-Marie Coriat strategic approach to capacity & skills gaps in scientifi...NHShcs
 
NHMRC and data sharing
NHMRC and data sharingNHMRC and data sharing
NHMRC and data sharingARDC
 
Duchenne Research Breakthrough Fund review and update
Duchenne Research Breakthrough Fund review and update Duchenne Research Breakthrough Fund review and update
Duchenne Research Breakthrough Fund review and update Muscular Dystrophy Campaign
 

Ähnlich wie 1st Network-of-BioThings Hackathon (20)

ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisa
ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years PisaERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisa
ERCIM Marie Curie - Alain Bensoussan Fellowship info - ERCIM 25 years Pisa
 
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf
2023-11-09 HealthRI Biobanking day_Amsterdam_Alain van Gool.pdf
 
Report from the International Confederation of Countries Advisory Council - M...
Report from the International Confederation of Countries Advisory Council - M...Report from the International Confederation of Countries Advisory Council - M...
Report from the International Confederation of Countries Advisory Council - M...
 
Data dialogue - Human Genomic Data Discovery
Data dialogue - Human Genomic Data DiscoveryData dialogue - Human Genomic Data Discovery
Data dialogue - Human Genomic Data Discovery
 
2nd Thematic Conference on Knowledge Commons - Call for papers
2nd Thematic Conference on Knowledge Commons - Call for papers2nd Thematic Conference on Knowledge Commons - Call for papers
2nd Thematic Conference on Knowledge Commons - Call for papers
 
Open Access Week - Oxford, 20-24 Oct 2014
Open Access Week - Oxford, 20-24 Oct 2014Open Access Week - Oxford, 20-24 Oct 2014
Open Access Week - Oxford, 20-24 Oct 2014
 
Open Science: Where Theory Meets Practice
Open Science: Where Theory Meets PracticeOpen Science: Where Theory Meets Practice
Open Science: Where Theory Meets Practice
 
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...
Samantha Robertson - NHMRC Perspectives on Increasing Access to Data from Pub...
 
Advocating for change in the scientific enterprise
Advocating for change in the scientific enterpriseAdvocating for change in the scientific enterprise
Advocating for change in the scientific enterprise
 
Open access - where are we now and where to from here?
Open access - where are we now and where to from here?Open access - where are we now and where to from here?
Open access - where are we now and where to from here?
 
Why ContentMining is useful
Why ContentMining is usefulWhy ContentMining is useful
Why ContentMining is useful
 
Why ContentMining is useful
Why ContentMining is usefulWhy ContentMining is useful
Why ContentMining is useful
 
Open Science in a European Perspective
Open Science in a European PerspectiveOpen Science in a European Perspective
Open Science in a European Perspective
 
THOR Workshop - Data Publishing PLOS
THOR Workshop - Data Publishing PLOSTHOR Workshop - Data Publishing PLOS
THOR Workshop - Data Publishing PLOS
 
Hackathon for health, assisted living, social care and communities nov 2015
Hackathon for health, assisted living, social care and communities nov 2015Hackathon for health, assisted living, social care and communities nov 2015
Hackathon for health, assisted living, social care and communities nov 2015
 
ContentMining for France and Europe; Lessons from 2 years in UK
ContentMining for France and Europe; Lessons from 2 years in UKContentMining for France and Europe; Lessons from 2 years in UK
ContentMining for France and Europe; Lessons from 2 years in UK
 
UK Dementia Research Institute
UK Dementia Research InstituteUK Dementia Research Institute
UK Dementia Research Institute
 
Anne-Marie Coriat strategic approach to capacity & skills gaps in scientifi...
Anne-Marie Coriat   strategic approach to capacity & skills gaps in scientifi...Anne-Marie Coriat   strategic approach to capacity & skills gaps in scientifi...
Anne-Marie Coriat strategic approach to capacity & skills gaps in scientifi...
 
NHMRC and data sharing
NHMRC and data sharingNHMRC and data sharing
NHMRC and data sharing
 
Duchenne Research Breakthrough Fund review and update
Duchenne Research Breakthrough Fund review and update Duchenne Research Breakthrough Fund review and update
Duchenne Research Breakthrough Fund review and update
 

Mehr von Michel Dumontier

A metadata standard for Knowledge Graphs
A metadata standard for Knowledge GraphsA metadata standard for Knowledge Graphs
A metadata standard for Knowledge GraphsMichel Dumontier
 
Data-Driven Discovery Science with FAIR Knowledge Graphs
Data-Driven Discovery Science with FAIR Knowledge GraphsData-Driven Discovery Science with FAIR Knowledge Graphs
Data-Driven Discovery Science with FAIR Knowledge GraphsMichel Dumontier
 
The Role of the FAIR Guiding Principles for an effective Learning Health System
The Role of the FAIR Guiding Principles for an effective Learning Health SystemThe Role of the FAIR Guiding Principles for an effective Learning Health System
The Role of the FAIR Guiding Principles for an effective Learning Health SystemMichel Dumontier
 
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...Michel Dumontier
 
The role of the FAIR Guiding Principles in a Learning Health System
The role of the FAIR Guiding Principles in a Learning Health SystemThe role of the FAIR Guiding Principles in a Learning Health System
The role of the FAIR Guiding Principles in a Learning Health SystemMichel Dumontier
 
Acclerating biomedical discovery with an internet of FAIR data and services -...
Acclerating biomedical discovery with an internet of FAIR data and services -...Acclerating biomedical discovery with an internet of FAIR data and services -...
Acclerating biomedical discovery with an internet of FAIR data and services -...Michel Dumontier
 
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...Michel Dumontier
 
Are we FAIR yet? And will it be worth it?
Are we FAIR yet? And will it be worth it?Are we FAIR yet? And will it be worth it?
Are we FAIR yet? And will it be worth it?Michel Dumontier
 
The Future of FAIR Data: An international social, legal and technological inf...
The Future of FAIR Data: An international social, legal and technological inf...The Future of FAIR Data: An international social, legal and technological inf...
The Future of FAIR Data: An international social, legal and technological inf...Michel Dumontier
 
Keynote at the 2018 Maastricht University Dinner
Keynote at the 2018 Maastricht University DinnerKeynote at the 2018 Maastricht University Dinner
Keynote at the 2018 Maastricht University DinnerMichel Dumontier
 
The future of science and business - a UM Star Lecture
The future of science and business - a UM Star LectureThe future of science and business - a UM Star Lecture
The future of science and business - a UM Star LectureMichel Dumontier
 
Developing and assessing FAIR digital resources
Developing and assessing FAIR digital resourcesDeveloping and assessing FAIR digital resources
Developing and assessing FAIR digital resourcesMichel Dumontier
 
Advancing Biomedical Knowledge Reuse with FAIR
Advancing Biomedical Knowledge Reuse with FAIRAdvancing Biomedical Knowledge Reuse with FAIR
Advancing Biomedical Knowledge Reuse with FAIRMichel Dumontier
 
A Framework to develop the FAIR Metrics
A Framework to develop the FAIR MetricsA Framework to develop the FAIR Metrics
A Framework to develop the FAIR MetricsMichel Dumontier
 
FAIR principles and metrics for evaluation
FAIR principles and metrics for evaluationFAIR principles and metrics for evaluation
FAIR principles and metrics for evaluationMichel Dumontier
 
Towards metrics to assess and encourage FAIRness
Towards metrics to assess and encourage FAIRnessTowards metrics to assess and encourage FAIRness
Towards metrics to assess and encourage FAIRnessMichel Dumontier
 

Mehr von Michel Dumontier (20)

A metadata standard for Knowledge Graphs
A metadata standard for Knowledge GraphsA metadata standard for Knowledge Graphs
A metadata standard for Knowledge Graphs
 
Data-Driven Discovery Science with FAIR Knowledge Graphs
Data-Driven Discovery Science with FAIR Knowledge GraphsData-Driven Discovery Science with FAIR Knowledge Graphs
Data-Driven Discovery Science with FAIR Knowledge Graphs
 
Evaluating FAIRness
Evaluating FAIRnessEvaluating FAIRness
Evaluating FAIRness
 
The Role of the FAIR Guiding Principles for an effective Learning Health System
The Role of the FAIR Guiding Principles for an effective Learning Health SystemThe Role of the FAIR Guiding Principles for an effective Learning Health System
The Role of the FAIR Guiding Principles for an effective Learning Health System
 
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...
CIKM2020 Keynote: Accelerating discovery science with an Internet of FAIR dat...
 
The role of the FAIR Guiding Principles in a Learning Health System
The role of the FAIR Guiding Principles in a Learning Health SystemThe role of the FAIR Guiding Principles in a Learning Health System
The role of the FAIR Guiding Principles in a Learning Health System
 
Acclerating biomedical discovery with an internet of FAIR data and services -...
Acclerating biomedical discovery with an internet of FAIR data and services -...Acclerating biomedical discovery with an internet of FAIR data and services -...
Acclerating biomedical discovery with an internet of FAIR data and services -...
 
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...
Accelerating Biomedical Research with the Emerging Internet of FAIR Data and ...
 
Are we FAIR yet? And will it be worth it?
Are we FAIR yet? And will it be worth it?Are we FAIR yet? And will it be worth it?
Are we FAIR yet? And will it be worth it?
 
The Future of FAIR Data: An international social, legal and technological inf...
The Future of FAIR Data: An international social, legal and technological inf...The Future of FAIR Data: An international social, legal and technological inf...
The Future of FAIR Data: An international social, legal and technological inf...
 
Keynote at the 2018 Maastricht University Dinner
Keynote at the 2018 Maastricht University DinnerKeynote at the 2018 Maastricht University Dinner
Keynote at the 2018 Maastricht University Dinner
 
The future of science and business - a UM Star Lecture
The future of science and business - a UM Star LectureThe future of science and business - a UM Star Lecture
The future of science and business - a UM Star Lecture
 
Are we FAIR yet?
Are we FAIR yet?Are we FAIR yet?
Are we FAIR yet?
 
Developing and assessing FAIR digital resources
Developing and assessing FAIR digital resourcesDeveloping and assessing FAIR digital resources
Developing and assessing FAIR digital resources
 
Advancing Biomedical Knowledge Reuse with FAIR
Advancing Biomedical Knowledge Reuse with FAIRAdvancing Biomedical Knowledge Reuse with FAIR
Advancing Biomedical Knowledge Reuse with FAIR
 
A Framework to develop the FAIR Metrics
A Framework to develop the FAIR MetricsA Framework to develop the FAIR Metrics
A Framework to develop the FAIR Metrics
 
FAIR principles and metrics for evaluation
FAIR principles and metrics for evaluationFAIR principles and metrics for evaluation
FAIR principles and metrics for evaluation
 
Towards metrics to assess and encourage FAIRness
Towards metrics to assess and encourage FAIRnessTowards metrics to assess and encourage FAIRness
Towards metrics to assess and encourage FAIRness
 
Data Science for the Win
Data Science for the WinData Science for the Win
Data Science for the Win
 
2016 bmdid-mappings
2016 bmdid-mappings2016 bmdid-mappings
2016 bmdid-mappings
 

Kürzlich hochgeladen

Controlling Parameters of Carbonate platform Environment
Controlling Parameters of Carbonate platform EnvironmentControlling Parameters of Carbonate platform Environment
Controlling Parameters of Carbonate platform EnvironmentRahulVishwakarma71547
 
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdf
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdfPests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdf
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdfPirithiRaju
 
Pests of ragi_Identification, Binomics_Dr.UPR
Pests of ragi_Identification, Binomics_Dr.UPRPests of ragi_Identification, Binomics_Dr.UPR
Pests of ragi_Identification, Binomics_Dr.UPRPirithiRaju
 
Role of herbs in hair care Amla and heena.pptx
Role of herbs in hair care  Amla and  heena.pptxRole of herbs in hair care  Amla and  heena.pptx
Role of herbs in hair care Amla and heena.pptxVaishnaviAware
 
Alternative system of medicine herbal drug technology syllabus
Alternative system of medicine herbal drug technology syllabusAlternative system of medicine herbal drug technology syllabus
Alternative system of medicine herbal drug technology syllabusPradnya Wadekar
 
MARSILEA notes in detail for II year Botany.ppt
MARSILEA  notes in detail for II year Botany.pptMARSILEA  notes in detail for II year Botany.ppt
MARSILEA notes in detail for II year Botany.pptaigil2
 
Basic Concepts in Pharmacology in molecular .pptx
Basic Concepts in Pharmacology in molecular  .pptxBasic Concepts in Pharmacology in molecular  .pptx
Basic Concepts in Pharmacology in molecular .pptxVijayaKumarR28
 
RCPE terms and cycles scenarios as of March 2024
RCPE terms and cycles scenarios as of March 2024RCPE terms and cycles scenarios as of March 2024
RCPE terms and cycles scenarios as of March 2024suelcarter1
 
CW marking grid Analytical BS - M Ahmad.docx
CW  marking grid Analytical BS - M Ahmad.docxCW  marking grid Analytical BS - M Ahmad.docx
CW marking grid Analytical BS - M Ahmad.docxmarwaahmad357
 
KeyBio pipeline for bioinformatics and data science
KeyBio pipeline for bioinformatics and data scienceKeyBio pipeline for bioinformatics and data science
KeyBio pipeline for bioinformatics and data scienceLayne Sadler
 
Main Exam Applied biochemistry final year
Main Exam Applied biochemistry final yearMain Exam Applied biochemistry final year
Main Exam Applied biochemistry final yearmarwaahmad357
 
MARKER ASSISTED SELECTION IN CROP IMPROVEMENT
MARKER ASSISTED SELECTION IN CROP IMPROVEMENTMARKER ASSISTED SELECTION IN CROP IMPROVEMENT
MARKER ASSISTED SELECTION IN CROP IMPROVEMENTjipexe1248
 
TORSION IN GASTROPODS- Anatomical event (Zoology)
TORSION IN GASTROPODS- Anatomical event (Zoology)TORSION IN GASTROPODS- Anatomical event (Zoology)
TORSION IN GASTROPODS- Anatomical event (Zoology)chatterjeesoumili50
 
Bureau of Indian Standards Specification of Shampoo.pptx
Bureau of Indian Standards Specification of Shampoo.pptxBureau of Indian Standards Specification of Shampoo.pptx
Bureau of Indian Standards Specification of Shampoo.pptxkastureyashashree
 
M.Pharm - Question Bank - Drug Delivery Systems
M.Pharm - Question Bank - Drug Delivery SystemsM.Pharm - Question Bank - Drug Delivery Systems
M.Pharm - Question Bank - Drug Delivery SystemsSumathi Arumugam
 
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...marwaahmad357
 
geometric quantization on coadjoint orbits
geometric quantization on coadjoint orbitsgeometric quantization on coadjoint orbits
geometric quantization on coadjoint orbitsHassan Jolany
 
soft skills question paper set for bba ca
soft skills question paper set for bba casoft skills question paper set for bba ca
soft skills question paper set for bba caohsadfeeling
 
biosynthesis of the cell wall and antibiotics
biosynthesis of the cell wall and antibioticsbiosynthesis of the cell wall and antibiotics
biosynthesis of the cell wall and antibioticsSafaFallah
 
Applied Biochemistry feedback_M Ahwad 2023.docx
Applied Biochemistry feedback_M Ahwad 2023.docxApplied Biochemistry feedback_M Ahwad 2023.docx
Applied Biochemistry feedback_M Ahwad 2023.docxmarwaahmad357
 

Kürzlich hochgeladen (20)

Controlling Parameters of Carbonate platform Environment
Controlling Parameters of Carbonate platform EnvironmentControlling Parameters of Carbonate platform Environment
Controlling Parameters of Carbonate platform Environment
 
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdf
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdfPests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdf
Pests of cumbu_Identification, Binomics, Integrated ManagementDr.UPR.pdf
 
Pests of ragi_Identification, Binomics_Dr.UPR
Pests of ragi_Identification, Binomics_Dr.UPRPests of ragi_Identification, Binomics_Dr.UPR
Pests of ragi_Identification, Binomics_Dr.UPR
 
Role of herbs in hair care Amla and heena.pptx
Role of herbs in hair care  Amla and  heena.pptxRole of herbs in hair care  Amla and  heena.pptx
Role of herbs in hair care Amla and heena.pptx
 
Alternative system of medicine herbal drug technology syllabus
Alternative system of medicine herbal drug technology syllabusAlternative system of medicine herbal drug technology syllabus
Alternative system of medicine herbal drug technology syllabus
 
MARSILEA notes in detail for II year Botany.ppt
MARSILEA  notes in detail for II year Botany.pptMARSILEA  notes in detail for II year Botany.ppt
MARSILEA notes in detail for II year Botany.ppt
 
Basic Concepts in Pharmacology in molecular .pptx
Basic Concepts in Pharmacology in molecular  .pptxBasic Concepts in Pharmacology in molecular  .pptx
Basic Concepts in Pharmacology in molecular .pptx
 
RCPE terms and cycles scenarios as of March 2024
RCPE terms and cycles scenarios as of March 2024RCPE terms and cycles scenarios as of March 2024
RCPE terms and cycles scenarios as of March 2024
 
CW marking grid Analytical BS - M Ahmad.docx
CW  marking grid Analytical BS - M Ahmad.docxCW  marking grid Analytical BS - M Ahmad.docx
CW marking grid Analytical BS - M Ahmad.docx
 
KeyBio pipeline for bioinformatics and data science
KeyBio pipeline for bioinformatics and data scienceKeyBio pipeline for bioinformatics and data science
KeyBio pipeline for bioinformatics and data science
 
Main Exam Applied biochemistry final year
Main Exam Applied biochemistry final yearMain Exam Applied biochemistry final year
Main Exam Applied biochemistry final year
 
MARKER ASSISTED SELECTION IN CROP IMPROVEMENT
MARKER ASSISTED SELECTION IN CROP IMPROVEMENTMARKER ASSISTED SELECTION IN CROP IMPROVEMENT
MARKER ASSISTED SELECTION IN CROP IMPROVEMENT
 
TORSION IN GASTROPODS- Anatomical event (Zoology)
TORSION IN GASTROPODS- Anatomical event (Zoology)TORSION IN GASTROPODS- Anatomical event (Zoology)
TORSION IN GASTROPODS- Anatomical event (Zoology)
 
Bureau of Indian Standards Specification of Shampoo.pptx
Bureau of Indian Standards Specification of Shampoo.pptxBureau of Indian Standards Specification of Shampoo.pptx
Bureau of Indian Standards Specification of Shampoo.pptx
 
M.Pharm - Question Bank - Drug Delivery Systems
M.Pharm - Question Bank - Drug Delivery SystemsM.Pharm - Question Bank - Drug Delivery Systems
M.Pharm - Question Bank - Drug Delivery Systems
 
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...
001 Case Study - Submission Point_c1051231_attempt_2023-11-23-14-08-42_ABS CW...
 
geometric quantization on coadjoint orbits
geometric quantization on coadjoint orbitsgeometric quantization on coadjoint orbits
geometric quantization on coadjoint orbits
 
soft skills question paper set for bba ca
soft skills question paper set for bba casoft skills question paper set for bba ca
soft skills question paper set for bba ca
 
biosynthesis of the cell wall and antibiotics
biosynthesis of the cell wall and antibioticsbiosynthesis of the cell wall and antibiotics
biosynthesis of the cell wall and antibiotics
 
Applied Biochemistry feedback_M Ahwad 2023.docx
Applied Biochemistry feedback_M Ahwad 2023.docxApplied Biochemistry feedback_M Ahwad 2023.docx
Applied Biochemistry feedback_M Ahwad 2023.docx
 

1st Network-of-BioThings Hackathon

  • 1. 1st NoB Hackathon April 26-27 @Stanford University @Maastrict University
  • 2. • Michel Dumontier • Natasha Haulman (superadmin) • Mark Musen • Andrew Su • Ben Good • Chris EveloData FAIRport • Mark Wilkinson
  • 3. European site @ Maastricht University • Chris Evelo (NoB) • Mark Wilkinson (FAIRport)
  • 5. 5 Pathways Diseases Proteins Variants Genes Drugs Goal: Assemble a network of biomedical entities that is comprehensive, current, and computable.
  • 6. The biomedical literature is growing fast 6 In 2013, there were 1,108,920 new articles indexed in PubMed, bringing the current total to over 23 million. 0 200,000 400,000 600,000 800,000 1,000,000 1,200,000 1983 1988 1993 1998 2003 2008 2013 Number of new PubMed-indexed articles
  • 7. The biomedical literature is growing fast 7 In 2013, there were 1,108,920 new articles indexed in PubMed, bringing the current total to over 23 million. 0 200,000 400,000 600,000 800,000 1,000,000 1,200,000 1983 1988 1993 1998 2003 2008 2013 Number of new PubMed-indexed articles k n o w l e d g e
  • 8. The Kitchen Sink approach • Biocuration • Text-mining • Crowdsourcing • Citizen science • Semantic web • Bio-ontologies • Network biology • Biomedical domain experts • Scientific publishers • Bio-IT • … 8
  • 9. 1. Knowledgebase infrastructure • Scaling to billions or trillions of relationships • Efficient query and access • Generic and extensible data model • Interoperability with other resources 9
  • 10. 2. Populating the knowledgebase • Scalability with biomedical research • Synergies between methods • Assessing confidence • Preserving provenance 10
  • 11. 3. Driving Biological Projects • Defining the domain area • N-of-1 cancer • Drug repurposing • Neuroscience • Defining the specific data needed • Defining the mining/analysis strategy • Defining the testable hypotheses 11
  • 12. Overarching goals • Demonstrate feasibility • Demonstrate collaboration • Demonstrate synergy • Secure funding for multi-center multi-PI consortium 12
  • 13. Schedule Saturday April 26 8:30AM: Registration and Breakfast 9:00AM: Introductions, Problem Statement, Ideas session 10:15AM: Project Pitches and Team Formation 11:00AM: Tutorials 12:15PM: Lunch is served 6:00PM: Progress Reports 7:00PM: Transportation leaves for restaurant 7:15-8:00PM: Cocktails @ Left Bank 8:00PM: Dinner @ Left bank Sunday April 27 8:00AM : Breakfast is served 12:15PM: Lunch is served 4:30PM : Pitches and Demos 6:00PM : Winners announced, prizes awarded, final remarks.
  • 14. Prizes • $500 for best motivating use case • $500 for most sustainable infrastructure design • 2x$500 for best applications
  • 15. Format • Form groups of at most 5 • Must contain at least 2 local participants • Up to 3 additional remote participants (total of 8) • All code must be open and available • GitHub repo https://github.com/Network-of-BioThings/
  • 16. Judges • Mark Musen (NCBO) • Bob Stanley (IO Informatics) • Paul Alexander (NCBO) • Manuel Salvadores (NCBO) • Michel Dumontier (NCBO) • Andrew Su (Scripps – Use Cases) • Criteria • Innovation • Integration • Sustainability / Scalability • Impact Potential
  • 17. Other Stuff • Wifi • Bathrooms • Room configuration • projectors
  • 18. Let’s Get Started! • GitHub • https://github.com/Network-of-BioThings/ • Hackathon repo • Use Cases • Resources • Participant Profiles